Reconstructing unseen transmission events to infer dengue dynamics from viral sequences
Henrik Salje,
Amy Wesolowski,
Tyler S. Brown,
Mathew V. Kiang,
Irina Maljkovic Berry,
Noemie Lefrancq,
Stefan Fernandez,
Richard G. Jarman,
Kriangsak Ruchusatsawat,
Sopon Iamsirithaworn,
Warunee P. Vandepitte,
Piyarat Suntarattiwong,
Jonathan M. Read,
Chonticha Klungthong,
Butsaya Thaisomboonsuk,
Kenth Engø-Monsen,
Caroline Buckee,
Simon Cauchemez,
Derek A. T. Cummings
Mar 22, 2021
Abstract: For most pathogens, transmission is driven by interactions between the behaviours of infectious individuals, the behaviours of the wider population, the local environment, and immunity. Phylogeographic approaches are...