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Staphylococcus caeli sp. nov., isolated from air sampling in an industrial rabbit holding.
Strain 82T, a Gram-stain-positive, coagulase-negative staphylococcus was isolated from an air sample obtained from an industrial rabbit holding in Italy. It is phylogenetically closely related to the coagulase-negative species...
The impact of quantitative optimization of hybridization conditions on gene expression analysis.
Peter Sykacek, David P Kreil, Lisa A Meadows, Richard P Auburn, Bettina Fischer, Steven Russell, Gos Micklem
May 26, 2011
Eukaryote hybrid genomes.
Interspecific hybridization is the process where closely related species mate and produce offspring with admixed genomes. The genomic revolution has shown that hybridization is common, and that it may represent an important...
Prediction of gene expression in embryonic structures of Drosophila melanogaster.
Understanding how sets of genes are coordinately regulated in space and time to generate the diversity of cell types that characterise complex metazoans is a major challenge in modern biology. The use of high-throughput...
Algorithms Animals Artificial Intelligence Cluster Analysis Computational Biology Databases Genetic Drosophila melanogaster Embryo Nonmammalian Gene Expression Gene Expression Profiling Gene Regulatory Networks Genes Developmental Genes Insect In Situ Hybridization Nucleic Acid Hybridization Oligonucleotide Array Sequence Analysis
Direct observation of the gene organization of the complement C4 and 21-hydroxylase loci by pulsed field gel electrophoresis.
Pulsed field gel electrophoresis and enzymes that cut genomic DNA infrequently have been used to define large RFLPs at the human C4 loci. With the enzymes BssH II or Sac II, and C4 or 21-hydroxylase DNA probes, it has been...
Recombination Rate Heterogeneity within Arabidopsis Disease Resistance Genes.
Kyuha Choi, Carsten Reinhard, Heïdi Serra, Piotr A Ziolkowski, Charles J Underwood, Xiaohui Zhao, Thomas J Hardcastle, Nataliya E Yelina, Catherine Griffin, Matthew Jackson, Christine Mézard, Gil McVean, Gregory P Copenhaver, Ian R Henderson
Jul 29, 2016
Breaking the waves
John C Marioni, Natalie P Thorne, Armand Valsesia, Tomas Fitzgerald, Richard Redon, Heike Fiegler, T Daniel Andrews, Barbara E Stranger, Andrew G Lynch, Emmanouil T Dermitzakis, Nigel P Carter, Simon Tavaré, Matthew E Hurles
Jun 14, 2011
High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer.
Suet F Chin, Andrew E Teschendorff, John C Marioni, Yanzhong Wang, Nuno L Barbosa-Morais, Natalie P Thorne, Jose L Costa, Sarah E Pinder, Mark A van de Wiel, Andrew R Green, Ian O Ellis, Peggy L Porter, Simon Tavaré, James D Brenton, Bauke Ylstra, Carlos Caldas
Jun 17, 2011
The speciation and hybridization history of the genus Salmonella.
Alexis Criscuolo, Sylvie Issenhuth-Jeanjean, Xavier Didelot, Kaisa Thorell, James Hale, Julian Parkhill, Nicholas R Thomson, François-Xavier Weill, Daniel Falush, Sylvain Brisse
Sep 06, 2019
Bacteria and archaea make up most of natural diversity, but the mechanisms that underlie the origin and maintenance of prokaryotic species are poorly understood. We investigated the speciation history of the genus Salmonella, an...
Scaling up DNA digital data storage by efficiently predicting DNA hybridisation using deep learning.
David Buterez
Oct 18, 2021
Deoxyribonucleic acid (DNA) has shown great promise in enabling computational applications, most notably in the fields of DNA digital data storage and DNA computing. Information is encoded as DNA strands, which will naturally...
Molecular cytogenetic analysis of breast cancer cell lines.
JM Davidson, KL Gorringe, SF Chin, B Orsetti, C Besret, C Courtay-Cahen, I Roberts, C Theillet, C Caldas, PA Edwards
Dec 03, 2020
The extensive chromosome rearrangements of breast carcinomas must contribute to tumour development, but have been largely intractable to classical cytogenetic banding. We report here the analysis by 24-colour karyotyping and...
A new look towards BAC-based array CGH through a comprehensive comparison with oligo-based array CGH.
Nicolas Wicker, Annaïck Carles, Ian G Mills, Maija Wolf, Abhi Veerakumarasivam, Henrik Edgren, Fabrice Boileau, Bohdan Wasylyk, Jack A Schalken, David E Neal, Olli Kallioniemi, Olivier Poch
Jun 16, 2011
Disruption of chromosome 11 in canine fibrosarcomas highlights an unusual variability of CDKN2B in dogs.
Jesús Aguirre-Hernández, Bruce S Milne, Chris Queen, Patricia CM O'Brien, Tess Hoather, Sean Haugland, Malcolm A Ferguson-Smith, Jane M Dobson, David R Sargan
Jun 14, 2011
BACKGROUND: In dogs in the western world neoplasia constitutes the most frequently diagnosed cause of death. Although there appear to be similarities between canine and human cancers, rather little is known about the cytogenetic...
Pluripotency-associated genes in human nasopharyngeal carcinoma CNE-2 cells are reactivated by a unique epigenetic sub-microenvironment.
Jun-Xia Cao, Yu-Xin Cui, Zi-Jie Long, Zhong-Min Dai, Ji-Yan Lin, Yi Liang, Fei-Meng Zheng, Yi-Xin Zeng, Quentin Liu
Apr 16, 2012
Development and optimization of a hybridization technique to type the classical class I and class II B genes of the chicken MHC.
Nicola D Potts, Coraline Bichet, Laurence Merat, Edouard Guitton, Andrew P Krupa, Terry A Burke, Lorna J Kennedy, Gabriele Sorci, Jim Kaufman
Nov 18, 2019
PMC42, a breast progenitor cancer cell line, has normal-like mRNA and microRNA transcriptomes.
Anna Git, Inmaculada Spiteri, Cherie Blenkiron, Mark J Dunning, Jessica CM Pole, Suet-Feung Chin, Yanzhong Wang, James Smith, Frederick J Livesey, Carlos Caldas
Jun 14, 2011
Proposed methods for testing and selecting the ERCC external RNA controls.
External RNA Controls Consortium
Feb 11, 2019
The External RNA Control Consortium (ERCC) is an ad-hoc group with approximately 70 members from private, public, and academic organizations. The group is developing a set of external RNA control transcripts that can be used to...
Bacteria Computational Biology DNA DNA Primers Dose-Response Relationship Drug Gene Expression Profiling Genetic Techniques Genomics Humans Models Statistical Nucleic Acid Hybridization Oligonucleotide Array Sequence Analysis Plasmids RNA RNA Messenger Reference Standards Reverse Transcriptase Polymerase Chain Reaction