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Abstract: Background: Horizontal gene transfer contributes to bacterial evolution through mobilising genes across various taxonomical boundaries. It is frequently mediated by mobile genetic elements (MGEs), which may capture...

Software Prokaryote microbial genomics horizontal gene transfer Acquired genes mobile genetic elements Physical linkage Population structure Association analysis linear mixed models principal components Network approach R package

Abstract: Background: Today an unprecedented amount of genetic sequence data is stored in publicly available repositories. For decades now, mitochondrial DNA (mtDNA) has been the workhorse of genetic studies, and as a result...

Software Novel computational methods for analysis of biological systems demographic history R package Mitochondrial DNA Public datasets Bayesian skyline plots

big data Interpretable machine learning R package Rough sets Rule-based classification transcriptomics Algorithms Case-Control Studies Computational Biology Data Mining Machine Learning

Bayesian skyline plots demographic history Mitochondrial DNA Public datasets R package Bayes Theorem DNA Mitochondrial Databases Nucleic Acid Sequence Analysis DNA

BACKGROUND: Horizontal gene transfer contributes to bacterial evolution through mobilising genes across various taxonomical boundaries. It is frequently mediated by mobile genetic elements (MGEs), which may capture, maintain...

Software Prokaryote microbial genomics horizontal gene transfer Acquired genes mobile genetic elements Physical linkage Population structure Association analysis linear mixed models principal components Network approach R package