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One thousand plant transcriptomes and the phylogenomics of green plants.
One Thousand Plant Transcriptomes Initiative
Dec 18, 2019
Green plants (Viridiplantae) include around 450,000-500,000 species1,2 of great diversity and have important roles in terrestrial and aquatic ecosystems. Here, as part of the One Thousand Plant Transcriptomes Initiative, we...
One thousand plant transcriptomes and the phylogenomics of green plants
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. Ullrich, Norman J. Wickett, Lisa DeGironimo, Patrick P. Edger, Ingrid E. Jordon-Thaden, Steve Joya, Tao Liu, Barbara Melkonian, Nicholas W. Miles, Lisa Pokorny, Charlotte Quigley, Philip Thomas, Juan Carlos Villarreal, Megan M. Augustin, Matthew D. Barrett, Regina S. Baucom, David J. Beerling, Ruben Maximilian Benstein, Ed Biffin, Samuel F. Brockington, Dylan O. Burge, Jason N. Burris, Kellie P. Burris, Valérie Burtet-Sarramegna, Ana L. Caicedo, Steven B. Cannon, Zehra Çebi, Ying Chang, Caspar Chater, John M. Cheeseman, Tao Chen, Neil D. Clarke, Harmony Clayton, Sarah Covshoff, Barbara J. Crandall-Stotler, Hugh Cross, Claude W. dePamphilis, Joshua P. Der, Ron Determann, Rowan C. Dickson, Verónica S. Di Stilio, Shona Ellis, Eva Fast, Nicole Feja, Katie J. Field, Dmitry A. Filatov, Patrick M. Finnegan, Sandra K. Floyd, Bruno Fogliani, Nicolás García, Gildas Gâteblé, Grant T. Godden, Falicia (Qi Yun) Goh, Stephan Greiner, Alex Harkess, James Mike Heaney, Katherine E. Helliwell, Karolina Heyduk, Julian M. Hibberd, Richard G. J. Hodel, Peter M. Hollingsworth, Marc T. J. Johnson, Ricarda Jost, Blake Joyce, Maxim V. Kapralov, Elena Kazamia, Elizabeth A. Kellogg, Marcus A. Koch, Matt Von Konrat, Kálmán Könyves, Toni M. Kutchan, Vivienne Lam, Anders Larsson, Andrew R. Leitch, Roswitha Lentz, Fay-Wei Li, Andrew J. Lowe, Martha Ludwig, Paul S. Manos, Evgeny Mavrodiev, Melissa K. McCormick, Michael McKain, Tracy McLellan, Joel R. McNeal, Richard E. Miller, Matthew N. Nelson, Yanhui Peng, Paula Ralph, Daniel Real, Chance W. Riggins, Markus Ruhsam, Rowan F. Sage, Ann K. Sakai, Moira Scascitella, Edward E. Schilling, Eva-Marie Schlösser, Heike Sederoff, Stein Servick, Emily B. Sessa, A. Jonathan Shaw, Shane W. Shaw, Erin M. Sigel, Cynthia Skema, Alison G. Smith, Ann Smithson, C. Neal Stewart, John R. Stinchcombe, Peter Szövényi, Jennifer A. Tate, Helga Tiebel, Dorset Trapnell, Matthieu Villegente, Chun-Neng Wang, Stephen G. Weller, Michael Wenzel, Stina Weststrand, James H. Westwood, Dennis F. Whigham, Shuangxiu Wu, Adrien S. Wulff, Yu Yang, Dan Zhu, Cuili Zhuang, Jennifer Zuidof, Mark W. Chase, J. Chris Pires, Carl J. Rothfels, Jun Yu, Cui Chen, Li Chen, Shifeng Cheng, Juanjuan Li, Ran Li, Xia Li, Haorong Lu, Yanxiang Ou, Xiao Sun, Xuemei Tan, Jingbo Tang, Zhijian Tian, Feng Wang, Jun Wang, Xiaofeng Wei, Xun Xu, Zhixiang Yan, Fan Yang, Xiaoni Zhong, Feiyu Zhou, Ying Zhu, Yong Zhang, Saravanaraj Ayyampalayam, Todd J. Barkman, Nam-phuong Nguyen, Naim Matasci, David R. Nelson, Erfan Sayyari, Eric K. Wafula, Ramona L. Walls, Tandy Warnow, Hong An, Nils Arrigo, Anthony E. Baniaga, Sally Galuska, Stacy A. Jorgensen, Thomas I. Kidder, Hanghui Kong, Patricia Lu-Irving, Hannah E. Marx, Xinshuai Qi, Chris R. Reardon, Brittany L. Sutherland, George P. Tiley, Shana R. Welles, Rongpei Yu, Shing Zhan, Lydia Gramzow, Günter Theißen, Gane Ka-Shu Wong
Oct 22, 2020
Abstract: Green plants (Viridiplantae) include around 450,000–500,000 species1, 2 of great diversity and have important roles in terrestrial and aquatic ecosystems. Here, as part of the One Thousand Plant Transcriptomes...
The Transcriptomes of Xiphinema index and Longidorus elongatus Suggest Independent Acquisition of Some Plant Parasitism Genes by Horizontal Gene Transfer in Early-Branching Nematodes.
Etienne GJ Danchin, Laetitia Perfus-Barbeoch, Corinne Rancurel, Peter Thorpe, Martine Da Rocha, Simon Bajew, Roy Neilson, Elena Sokolova Guzeeva, Corinne Da Silva, Julie Guy, Karine Labadie, Daniel Esmenjaud, Johannes Helder, John T Jones, Sebastian Eves-van den Akker
Feb 26, 2019
Nematodes have evolved the ability to parasitize plants on at least four independent occasions, with plant parasites present in Clades 1, 2, 10 and 12 of the phylum. In the case of Clades 10 and 12, horizontal gene transfer of...
Plant defense signals
Plant viruses face an array of host defenses. Well-studied responses that protect against viruses include effector-triggered immunity, induced resistance (such as systemic acquired resistance mediated by salicylic acid), and RNA...
Winthrop Receives Liberty Tree Initiative Grant
Winthrop University
Jan 01, 0001
Winthrop is one of eight schools nationwide to receive a $5,000 grant through the Liberty Tree Initiative. Initiative-related programming focuses on the five freedoms of the First Amendment.
Published by: Winthrop University
Bilateral Trade Between China and Other Countries
The purpose of this study is to analyze the performance of one belt, one road in member countries in the effects of bilateral trade. The sample for this study includes 67 countries along the route for the period between 2013 and...
Published by: IGI Global Scientific Publishing
A Phylogenomic Analysis of the Floral Transcriptomes of Sexually Deceptive and Rewarding European Orchids, Ophrys and Gymnadenia.
Laura Piñeiro Fernández, Kelsey JRP Byers, Jing Cai, Khalid EM Sedeek, Roman T Kellenberger, Alessia Russo, Weihong Qi, Catharine Aquino Fournier, Philipp M Schlüter
Jan 03, 2020
The orchids (Orchidaceae) constitute one of the largest and most diverse families of flowering plants. They have evolved a great variety of adaptations to achieve pollination by a diverse group of pollinators. Many orchids...
Social & Behavioral Research Lab Joins Transparency Initiative
Winthrop University
Jan 01, 0001
By joining the initiative, Winthrop is supporting a mutual goal of more effective disclosure of research methods by all organizations and keeping survey research an open science. The public university is one of more than 30...
Published by: Winthrop University
Comparative Analysis of Alternative Splicing in Homo sapiens, Mus musculus and Rattus norvegicus Transcriptomes
Bahar Taneri
Jan 01, 0001
Analyzing transcriptomes in the context of all available genome and transcript sequence data has the potential to reveal biologically meaningful insight into functional properties of genes and complexity of genomes. Alternative...
Published by: Rockefeller University
Plant efficiency
Abstract: The plant efficiency of a nuclear fusion power plant is considered. During nominal operation, the plant efficiency is determined by the thermodynamic efficiency and the recirculated power fraction. However, on average...
A Phylogenomic Analysis of the Floral Transcriptomes of Sexually Deceptive and Rewarding European Orchids, Ophrys and Gymnadenia
Laura Piñeiro Fernández, Kelsey J. R .P. Byers, Jing Cai, Khalid E. M. Sedeek, Roman T. Kellenberger, Alessia Russo, Weihong Qi, Catharine Aquino Fournier, Philipp M. Schlüter
Dec 24, 2019
The orchids (Orchidaceae) constitute one of the largest and most diverse families of flowering plants. They have evolved a great variety of adaptations to achieve pollination by a diverse group of pollinators. Many orchids...
Plant efficiency
Abstract: The plant efficiency of a nuclear fusion power plant is considered. During nominal operation, the plant efficiency is determined by the thermodynamic efficiency and the recirculated power fraction. However, on average...
Plant efficiency
Abstract: The plant efficiency of a nuclear fusion power plant is considered. During nominal operation, the plant efficiency is determined by the thermodynamic efficiency and the recirculated power fraction. However, on average...
Best practices for multi-ancestry, meta-analytic transcriptome-wide association studies
Arjun Bhattacharya, Jibril B Hirbo, Dan Zhou, Wei Zhou, Jie Zheng, Masahiro Kanai, Global Biobank Meta-analysis Initiative, Bogdan Pasaniuc, Eric R Gamazon, Nancy J Cox
Dec 08, 2022
The Global Biobank Meta-analysis Initiative (GBMI), through its diversity, provides a valuable opportunity to study population-wide and ancestry-specific genetic associations. However, with multiple ascertainment strategies and...
Plant efficiency
Abstract
The plant efficiency of a nuclear fusion power plant is considered. During nominal operation, the plant efficiency is determined by the thermodynamic efficiency and the...
Plant efficiency
Abstract: The plant efficiency of a nuclear fusion power plant is considered. During nominal operation, the plant efficiency is determined by the thermodynamic efficiency and the recirculated power fraction. However, on average...
Meg Webber Selected for Global Learning Initiative Duties
Winthrop University
Jan 01, 0001
The GLI is Winthrop University's Quality Enhancement Plan, a comprehensive initiative that is a requirement of the Southern Association of Colleges and Schools reaffirmation of accreditation processes. As the initiative...
Published by: Winthrop University
Sono-photo-degradation of Carbamazepine in a thin falling film reactor
The photo-Fenton degradation of carbamazepine (CBZ) assisted with ultrasound radiation (US/UV/H2O2/Fe) was tested in a lab thin film reactor allowing high TOC removals (89% in 35 minutes). The synergism between the UV process...
Plant efficiency
Abstract: The plant efficiency of a nuclear fusion power plant is considered. During nominal operation, the plant efficiency is determined by the thermodynamic efficiency and the recirculated power fraction. However, on average...
Winthrop to Participate in Student Development Initiative
Winthrop University
Jan 01, 0001
The inventory was developed as part of the Association of American Colleges and Universities initiative called Core Commitments: Educating Students for Personal and Social Responsibility. Winthrop used results from the first...
Published by: Winthrop University
Modelling Vector Transmission and Epidemiology of Co-Infecting Plant Viruses
Linda J. S. Allen, Vrushali A. Bokil, Nik J. Cunniffe, Frédéric M. Hamelin, Frank M. Hilker, Michael J. Jeger
Dec 15, 2019
Co-infection of plant hosts by two or more viruses is common in agricultural crops and natural plant communities. A variety of models have been used to investigate the dynamics of co-infection which track only the disease status...
Quantification of the plant terpenome
Plant essential oils are complex mixtures of volatile organic compounds, which play indispensable roles in communication, defense, and adaptive evolution. The complete chemical library produced by a plant is referred to as its...
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