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Results: 470
Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph.
BACKGROUND: During the last decade, the analysis of ancient DNA (aDNA) sequence has become a powerful tool for the study of past human populations. However, the degraded nature of aDNA means that aDNA molecules are short and...
Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph
Abstract: Background: During the last decade, the analysis of ancient DNA (aDNA) sequence has become a powerful tool for the study of past human populations. However, the degraded nature of aDNA means that aDNA molecules are...
Haplotype-aware graph indexes.
MOTIVATION: The variation graph toolkit (VG) represents genetic variation as a graph. Although each path in the graph is a potential haplotype, most paths are non-biological, unlikely recombinations of true haplotypes. RESULTS...
Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph
Abstract: Background: During the last decade, the analysis of ancient DNA (aDNA) sequence has become a powerful tool for the study of past human populations. However, the degraded nature of aDNA means that aDNA molecules are...
Genotyping structural variants in pangenome graphs using the vg toolkit
Glenn Hickey, David Heller, Jean Monlong, Jonas A. Sibbesen, Jouni Sirén, Jordan Eizenga, Eric T. Dawson, Erik Garrison, Adam M. Novak, Benedict Paten
Jun 06, 2020
Abstract: Structural variants (SVs) remain challenging to represent and study relative to point mutations despite their demonstrated importance. We show that variation graphs, as implemented in the vg toolkit, provide an...
Genotyping structural variants in pangenome graphs using the vg toolkit.
Glenn Hickey, David Heller, Jean Monlong, Jonas A Sibbesen, Jouni Sirén, Jordan Eizenga, Eric T Dawson, Erik Garrison, Adam M Novak, Benedict Paten
Feb 11, 2021
Structural variants (SVs) remain challenging to represent and study relative to point mutations despite their demonstrated importance. We show that variation graphs, as implemented in the vg toolkit, provide an effective means...
Genotyping structural variants in pangenome graphs using the vg toolkit.
Glenn Hickey, David Heller, Jean Monlong, Jonas A Sibbesen, Jouni Sirén, Jordan Eizenga, Eric T Dawson, Erik Garrison, Adam M Novak, Benedict Paten
Mar 15, 2020
Structural variants (SVs) remain challenging to represent and study relative to point mutations despite their demonstrated importance. We show that variation graphs, as implemented in the vg toolkit, provide an effective means...
Published by: Genome biology
Quantum Physics and Relativity in Lovecraft's Fiction
Garrison McCammon
Jan 01, 0001
The early twentieth century brought about some of the best and most influential horror or weird tales ever written in the English speaking world. The most impressive and most lauded author of the group composed of such figures...
weird tales supernatural horror relativity non-Euclidean geometry Cthulhu Joshi Gothic fiction Arts and Humanities Cosmology, Relativity, and Gravity English Language and Literature Other Astrophysics and Astronomy
Published by: Ursinus College
Viral coinfection analysis using a MinHash toolkit
Eric T. Dawson, Sarah Wagner, David Roberson, Meredith Yeager, Joseph Boland, Erik Garrison, Stephen Chanock, Mark Schiffman, Tina Raine-Bennett, Thomas Lorey, Phillip E. Castle, Lisa Mirabello, Richard Durbin
Jul 11, 2020
Abstract: Background: Human papillomavirus (HPV) is a common sexually transmitted infection associated with cervical cancer that frequently occurs as a coinfection of types and subtypes. Highly similar sublineages that show over...
Viral coinfection analysis using a MinHash toolkit.
Eric T Dawson, Sarah Wagner, David Roberson, Meredith Yeager, Joseph Boland, Erik Garrison, Stephen Chanock, Mark Schiffman, Tina Raine-Bennett, Thomas Lorey, Phillip E Castle, Lisa Mirabello, Richard Durbin
Jun 20, 2019
BACKGROUND: Human papillomavirus (HPV) is a common sexually transmitted infection associated with cervical cancer that frequently occurs as a coinfection of types and subtypes. Highly similar sublineages that show over 100-fold...
Contrasting Instructional Technology Adoption in K-12 Education to Promote Digital Equity
This quantitative study examined the frequency of usage and teacher perception of educational technology by K - 12 public school teachers in three geographic settings: urban, rural, and suburban. The objective aimed to uncover...
Published by: IGI Global Scientific Publishing
Winthrop Bookstore to Host Nov. 15 Book Signing for Three Authors
Winthrop University
Jan 01, 0001
Alumna Jessica Leake '07, '08, former Winthrop employee Margaret Garrison and Carol Injaychock will autograph books Nov. 15 at 10 a.m. at the Winthrop Bookstore. The signing is free and open to the public.
Published by: Winthrop University
Creating Elementary-Aged Agents of Change
This chapter focused on the notion of implementing Civil Rights-themed literature with elementary-aged students through interactive read alouds. With traditional pre-packaged scripted curriculum programs, teachers are challenged...
multicultural children’s literature Civil Rights Movement interactive read alouds Education Language and Literacy Education
Published by: Digital Commons @ Texas A&M University-San Antonio
Creating Elementary-Aged Agents of Change
This chapter focused on the notion of implementing Civil Rights-themed literature with elementary-aged students through interactive read alouds. With traditional pre-packaged scripted curriculum programs, teachers are challenged...
multicultural children’s literature Civil Rights Movement interactive read alouds Education Language and Literacy Education
Published by: Digital Commons @ Texas A&M University-San Antonio
Creating Elementary-Aged Agents of Change
This chapter focused on the notion of implementing Civil Rights-themed literature with elementary-aged students through interactive read alouds. With traditional pre-packaged scripted curriculum programs, teachers are challenged...
multicultural children’s literature Civil Rights Movement interactive read alouds Education Language and Literacy Education
Published by: Digital Commons @ Texas A&M University-San Antonio
Monitoring what is real
Preparing Millennials as Digital Citizens and Socially and Environmentally Responsible Business Professionals in a Socially Irresponsible Climate
millenials Social Responsibility Business Education digital citizenship environmental sustainability Applied Ethics Business Administration, Management, and Operations Business Law, Public Responsibility, and Ethics Computer Sciences Curriculum and Instruction Curriculum and Social Inquiry Higher Education Information Security
Published by: Winthrop University
Paracingulate Sulcus Morphology and Hallucinations in Clinical and Nonclinical Groups.
Jane R Garrison, Charles Fernyhough, Simon McCarthy-Jones, Jon S Simons, Iris EC Sommer
Dec 06, 2018
Testing continuum models of psychosis
Jane R Garrison, Peter Moseley, Ben Alderson-Day, David Smailes, Charles Fernyhough, Jon S Simons
Feb 08, 2017
Arts-based methods for hallucination research.
Katie Melvin, Colleen PE Rollins, John Cromby, Jon Crossley, Jane R Garrison, Graham K Murray, John Suckling
Nov 08, 2021
INTRODUCTION: Neurocognitive models of hallucinations posit theories of misattribution and deficits in the monitoring of mental or perceptual phenomena but cannot yet account for the subjective experience of hallucinations...
Interview with Emily Richardson Ivory - OH 663
Emily Richardson Ivory, Emmett Scott High School, Civil Rights, Cecil Augustus Ivory, Sr.
Jan 01, 0001
This interview was conducted by Dr. George Garrison with Emily Richardson Ivory (1925-2008). Mrs. Ivory was a native of Charlotte, North Carolina and a longtime elementary school teacher in the Carolinas. After moving to...
Published by: Winthrop University
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