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Interview with Paul Van Buren Hatten - VHP 001
Paul Van Buren Hatten
Jan 01, 0001
In his January 19, 2004 interview with Lee Q. Miller, Paul Van Buren Hatten explains how he entered the service during WWII and became a ball gunner for the Air Force. Hatten recalls basic training, his first mission, and the...
Published by: Winthrop University
miRBase
miRBase is the central online repository for microRNA (miRNA) nomenclature, sequence data, annotation and target prediction. The current release (10.0) contains 5071 miRNA loci from 58 species, expressing 5922 distinct mature...
Large-scale analysis of microRNA expression, epi-transcriptomic features and biogenesis.
MicroRNAs are important genetic regulators in both animals and plants. They have a range of functions spanning development, differentiation, growth, metabolism and disease. The advent of next-generation sequencing technologies...
Detecting microRNA binding and siRNA off-target effects from expression data.
Sylamer is a method for detecting microRNA target and small interfering RNA off-target signals in 3' untranslated regions from a ranked gene list, sorted from upregulated to downregulated, after a microRNA perturbation or RNA...
miRBase
Sam Griffiths-Jones, Russell J Grocock, Stijn van Dongen, Alex Bateman, Anton J Enright
Nov 16, 2017
The miRBase database aims to provide integrated interfaces to comprehensive microRNA sequence data, annotation and predicted gene targets. miRBase takes over functionality from the microRNA Registry and fulfils three main roles...
Construction, visualisation, and clustering of transcription networks from microarray expression data.
Tom C Freeman, Leon Goldovsky, Markus Brosch, Stijn van Dongen, Pierre Mazière, Russell J Grocock, Shiri Freilich, Janet Thornton, Anton J Enright
Jan 22, 2018
Network analysis transcends conventional pairwise approaches to data analysis as the context of components in a network graph can be taken into account. Such approaches are increasingly being applied to genomics data, where...
RNA editing of human microRNAs.
Matthew J Blow, Russell J Grocock, Stijn van Dongen, Anton J Enright, Ed Dicks, P Andrew Futreal, Richard Wooster, Michael R Stratton
Jan 22, 2018
BACKGROUND: MicroRNAs (miRNAs) are short RNAs of around 22 nucleotides that regulate gene expression. The primary transcripts of miRNAs contain double-stranded RNA and are therefore potential substrates for adenosine to inosine...
Mirnovo
Dimitrios M Vitsios, Elissavet Kentepozidou, Leonor Quintais, Elia Benito-Gutiérrez, Stijn van Dongen, Matthew P Davis, Anton J Enright
Jan 24, 2018
The discovery of microRNAs (miRNAs) remains an important problem, particularly given the growth of high-throughput sequencing, cell sorting and single cell biology. While a large number of miRNAs have already been annotated...
Large-scale identification of microRNA targets in murine Dgcr8-deficient embryonic stem cell lines.
Matthew PA Davis, Cei Abreu-Goodger, Stijn van Dongen, Dong Lu, Peri H Tate, Nenad Bartonicek, Claudia Kutter, Pentao Liu, William C Skarnes, Anton J Enright, Ian Dunham
Nov 16, 2017
Small RNAs such as microRNAs play important roles in embryonic stem cell maintenance and differentiation. A broad range of microRNAs is expressed in embryonic stem cells while only a fraction of their targets have been...
Exploring regulatory networks of miR-96 in the developing inner ear.
Morag A Lewis, Annalisa Buniello, Jennifer M Hilton, Fei Zhu, William I Zhang, Stephanie Evans, Stijn van Dongen, Anton J Enright, Karen P Steel
Jan 22, 2018
Mutations in the microRNA Mir96 cause deafness in mice and humans. In the diminuendo mouse, which carries a single base pair change in the seed region of miR-96, the sensory hair cells crucial for hearing fail to develop fully...
Donald D. Van Slyke, 1916
The Rockefeller University
Jan 01, 0001
Dr. Donald D. Van Slyke. The Present Significance of the Amino-Acids in Physiology and Pathology
Lecture delivered January 15th, 1916
Published by: J.B. Lippincott Company
Transposon-driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution.
Matthew P Davis, Claudia Carrieri, Harpreet K Saini, Stijn van Dongen, Tommaso Leonardi, Giovanni Bussotti, Jack M Monahan, Tania Auchynnikava, Angelo Bitetti, Juri Rappsilber, Robin C Allshire, Alena Shkumatava, Dónal O'Carroll, Anton J Enright
Nov 23, 2017
Spermatogenesis is associated with major and unique changes to chromosomes and chromatin. Here, we sought to understand the impact of these changes on spermatogenic transcriptomes. We show that long terminal repeats (LTRs) of...
endogenous retroviruses genome evolution lncRNA Spermatogenesis Transcriptome Animals DNA Transposable Elements Endogenous Retroviruses evolution Molecular Genomics Male Mice Open Reading Frames Promoter Regions Genetic RNA Long Noncoding Spermatocytes Spermatogenesis Terminal Repeat Sequences Transcription Genetic Transcriptome
Visualization and analysis of RNA-Seq assembly graphs.
Fahmi W Nazarie, Barbara Shih, Tim Angus, Mark W Barnett, Sz-Hau Chen, Kim M Summers, Karsten Klein, Geoffrey J Faulkner, Harpreet K Saini, Mick Watson, Stijn van Dongen, Anton J Enright, Tom C Freeman
Jan 21, 2020
RNA-Seq is a powerful transcriptome profiling technology enabling transcript discovery and quantification. Whilst most commonly used for gene-level quantification, the data can be used for the analysis of transcript isoforms....
Defect passivation of transition metal dichalcogenides via a charge transfer van der Waals interface.
Jun Hong Park, Atresh Sanne, Yuzheng Guo, Matin Amani, Kehao Zhang, Hema CP Movva, Joshua A Robinson, Ali Javey, John Robertson, Sanjay K Banerjee, Andrew C Kummel
Apr 13, 2018
Integration of transition metal dichalcogenides (TMDs) into next-generation semiconductor platforms has been limited due to a lack of effective passivation techniques for defects in TMDs. The formation of an organic-inorganic...
Heterostructures formed through abraded van der Waals materials
Darren Nutting, Jorlandio F. Felix, Evan Tillotson, Dong-Wook Shin, Adolfo De Sanctis, Hong Chang, Nick Cole, Saverio Russo, Adam Woodgate, Ioannis Leontis, Henry A. Fernández, Monica F. Craciun, Sarah J. Haigh, Freddie Withers
Jun 16, 2020
Abstract: To fully exploit van der Waals materials and their vertically stacked heterostructures, new mass-scalable production routes which are low cost but preserve the high electronic and optical quality of the single crystals...
MiR-277/4989 regulate transcriptional landscape during juvenile to adult transition in the parasitic helminth Schistosoma mansoni.
Anna V Protasio, Stijn van Dongen, Julie Collins, Leonor Quintais, Diogo M Ribeiro, Florian Sessler, Martin Hunt, Gabriel Rinaldi, James J Collins, Anton J Enright, Matthew Berriman
Jan 22, 2018
Schistosomes are parasitic helminths that cause schistosomiasis, a disease affecting circa 200 million people, primarily in underprivileged regions of the world. Schistosoma mansoni is the most experimentally tractable...
Heterostructures formed through abraded van der Waals materials
Darren Nutting, Jorlandio F. Felix, Evan Tillotson, Dong-Wook Shin, Adolfo De Sanctis, Hong Chang, Nick Cole, Saverio Russo, Adam Woodgate, Ioannis Leontis, Henry A. Fernández, Monica F. Craciun, Sarah J. Haigh, Freddie Withers
Jun 17, 2021
Abstract: To fully exploit van der Waals materials and their vertically stacked heterostructures, new mass-scalable production routes which are low cost but preserve the high electronic and optical quality of the single crystals...
The role of Pb oxidation state of the precursor in the formation of 2D perovskite microplates.
Heterostructures formed through abraded van der Waals materials.
Darren Nutting, Jorlandio F Felix, Evan Tillotson, Dong-Wook Shin, Adolfo De Sanctis, Hong Chang, Nick Cole, Saverio Russo, Adam Woodgate, Ioannis Leontis, Henry A Fernández, Monica F Craciun, Sarah J Haigh, Freddie Withers
Aug 07, 2020
To fully exploit van der Waals materials and their vertically stacked heterostructures, new mass-scalable production routes which are low cost but preserve the high electronic and optical quality of the single crystals are...
Cindy Van Buren Appointed to Winthrop Board of Trustees
Winthrop University
Jan 01, 0001
Van Buren's appointment is effective immediately, and the Prosperity resident will join the Board of Trustees at its next meeting on Aug. 25. She has worked at the S.C. State Department of Education since April 2013 and is...
Published by: Winthrop University
The two most common histological subtypes of malignant germ cell tumour are distinguished by global microRNA profiles, associated with differential transcription factor expression.
Matthew J Murray, Harpreet K Saini, Stijn van Dongen, Roger D Palmer, Balaji Muralidhar, Mark R Pett, Matias Piipari, Claire M Thornton, James C Nicholson, Anton J Enright, Nicholas Coleman
Jun 14, 2011
An ENU-induced mutation of miR-96 associated with progressive hearing loss in mice.
Morag A Lewis, Elizabeth Quint, Anne M Glazier, Helmut Fuchs, Martin Hrabé de Angelis, Cordelia Langford, Stijn van Dongen, Cei Abreu-Goodger, Matias Piipari, Nick Redshaw, Tamas Dalmay, Miguel Angel Moreno-Pelayo, Anton J Enright, Karen P Steel
Jan 23, 2018
Progressive hearing loss is common in the human population, but little is known about the molecular basis. We report a new N-ethyl-N-nitrosurea (ENU)-induced mouse mutant, diminuendo, with a single base change in the seed region...
Negative Differential Resistance in van der Waals Heterostructures Due to Moiré-Induced Spectral Reconstruction
Formation of moiré superlattices is common in van der Waals heterostructures as a result of the mismatch between lattice constants and misalignment of crystallographic directions of the constituent two-dimensional crystals....
Critical Response of a Quantum van der Pol Oscillator.
Classical dynamical systems close to a critical point are known to act as efficient sensors due to a strongly nonlinear response. We explore such systems in the quantum regime by modeling a quantum version of a driven van der...
Emergence of interfacial polarons from electron-phonon coupling in graphene/h-BN van der Waals heterostructures
Chaoyu Chen, José Avila, Shuopei Wang, Yao Wang, Marcin Mucha-Kruczynski, Cheng Shen, Rong Yang, Benjamin Nosarzewski, Thomas P. Devereaux, Guangyu Zhang, Maria-Carmen Asensio
Feb 14, 2018
van der Waals heterostructures, vertical stacks of layered materials, offer new opportunities for novel quantum phenomena which are absent in their constituent components. Here we report the emergence of polaron quasiparticles...
Migdal-Eliashberg theory NanoARPES electron-phonon coupling electronic structure Polaron van der Waals heterostructure /dk/atira/pure/subjectarea/asjc/1500/1502 name=Bioengineering /dk/atira/pure/subjectarea/asjc/1600/1600 name=General Chemistry /dk/atira/pure/subjectarea/asjc/2500/2500 name=General Materials Science /dk/atira/pure/subjectarea/asjc/3100/3104 name=Condensed Matter Physics /dk/atira/pure/subjectarea/asjc/2200/2210 name=Mechanical Engineering
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