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Alevin efficiently estimates accurate gene abundances from dscRNA-seq data.
Avi Srivastava
,
Laraib Malik
,
Tom Smith
,
Ian Sudbery
,
Rob Patro
May 27, 2019
We introduce alevin, a fast end-to-end pipeline to process droplet-based single-cell RNA sequencing data, performing cell barcode detection, read mapping, unique molecular identifier (UMI) deduplication, gene count estimation...
Cellular barcode
Quantification
Single-cell RNA-seq
UMI deduplication
Animals
DNA barcoding
Taxonomic
Humans
Mice
Sequence Analysis
RNA
Single-Cell Analysis
Software
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