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MOTIVATION: Single-cell RNA sequencing (scRNA-seq) is increasingly used to study gene expression at the level of individual cells. However, preparing raw sequence data for further analysis is not a straightforward process....
Vireo
Multiplexed single-cell RNA-seq analysis of multiple samples using pooling is a promising experimental design, offering increased throughput while allowing to overcome batch variation. To reconstruct the sample identify of each...
A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor.
Single-cell RNA sequencing (scRNA-seq) is widely used to profile the transcriptome of individual cells. This provides biological resolution that cannot be matched by bulk RNA sequencing, at the cost of increased technical noise...
f-scLVM
Florian Buettner, Naruemon Pratanwanich, Davis J McCarthy, John C Marioni, Oliver Stegle
Mar 26, 2018
Single-cell RNA-sequencing (scRNA-seq) allows studying heterogeneity in gene expression in large cell populations. Such heterogeneity can arise due to technical or biological factors, making decomposing sources of variation...
Gene set annotations Single-cell RNA-seq Sparse factor analysis Animals Computer Simulation Databases as Topic Factor Analysis Statistical Gene Expression Regulation Mice Models Theoretical Mouse embryonic stem cells Neurons Reproducibility of Results Sequence Analysis RNA Single-Cell Analysis Software
Green Infrastructure, Revitalization, and Sustainability
MCOM 441 Class "American Sponge City: Alternative Water Structures"
Avery Davis: "The Los Angeles River: A City's Urban Heartbeat"
Robyn M. B. Stuber "Linking Social Sustainability to Sea Level Rise Through Vulnerability in...
Published by: Winthrop University
Classification of low quality cells from single-cell RNA-seq data.
Tomislav Ilicic, Jong Kyoung Kim, Aleksandra A Kolodziejczyk, Frederik Otzen Bagger, Davis James McCarthy, John C Marioni, Sarah A Teichmann
May 16, 2019
Single-cell RNA sequencing (scRNA-seq) has broad applications across biomedical research. One of the key challenges is to ensure that only single, live cells are included in downstream analysis, as the inclusion of compromised...
Method to Synchronize Cell Cycle of Human Pluripotent Stem Cells without Affecting Their Fundamental Characteristics.
Whitton Best Practice Series for Small Business Owners Begins on March 8
Winthrop University
Jan 01, 0001
The objective of the Whitton Best Practices Series, sponsored by Davis and developed in conjunction with Winthrop faculty, is to provide free or low-cost access to current state-of-the-art knowledge relevant to small business...
Published by: Winthrop University
Combined single-cell profiling of expression and DNA methylation reveals splicing regulation and heterogeneity.
Stephanie M Linker, Lara Urban, Stephen J Clark, Mariya Chhatriwala, Shradha Amatya, Davis J McCarthy, Ingo Ebersberger, Ludovic Vallier, Wolf Reik, Oliver Stegle, Marc Jan Bonder
Apr 10, 2019
BACKGROUND: Alternative splicing is a key regulatory mechanism in eukaryotic cells and increases the effective number of functionally distinct gene products. Using bulk RNA sequencing, splicing variation has been studied across...
The Ursinus Weekly, October 28, 1940
Nicholas Barry, Dillwyn Darlington, Garnet Adams, James Raban, John F. Rauhauser, Douglas Davis, M. Virginia Ernest
Jan 01, 0001
Senator J. A. Ellender holds Willkie temperamentally unfit for president Importance of 'but' told by vespers talk Connor calls news staff to plan for Jr. paper Republican rally to hear Davis tomorrow evening Rev. Mr. Faye...
Ursinus College Collegeville Pennsylvania newspaper James J. Davis Joseph A. Ellender James Carter John W. Mauchly Edwin N. Faye Harvey L. Carter International Relations Club Huey Long LIBRARY field hockey Football Soccer cultural history Higher Education Liberal Studies Social History United States History
Published by: Ursinus College
The Ursinus Weekly, December 9, 1940
Music 'who's who' honors Dr. Philip in 1941 edition Ursinus to open Christmas season with 'Messiah' presentation Thursday Jerome Davis calls for student aid in transitional period Vespers group told to rely more on faith Y...
Ursinus College Collegeville Pennsylvania newspaper William F. Philip Messiah Edward K. Knettler Eugene Miller Lantern Christmas Alfred M. Wilcox student government Donald G. Baker debate team LIBRARY Basketball field hockey Jesse Heiges Irwin S. Leinbach Elmer C. Bertolet cultural history Higher Education Liberal Studies Social History United States History
Published by: Ursinus College
Understanding Morale in Higher Education Workplaces
Kaetrena Davis Kendrick, '95
Jan 01, 0001
Published by: Winthrop University
Rough Music and Charivari
Alexandra Walsham
Oct 31, 2018
In 1971 Natalie Zemon Davis published a seminal article in the pages of Past and Present, entitled ‘The Reasons of Misrule: Youth Groups and Charivaris in Sixteenth-Century France’. A study of the carnivalesque rituals of...
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression.
Anna S E Cuomo, Daniel D Seaton, Davis J McCarthy, Iker Martinez, Marc Jan Bonder, Jose Garcia-Bernardo, Shradha Amatya, Pedro Madrigal, Abigail Isaacson, Florian Buettner, Andrew Knights, Kedar Nath Natarajan, Ludovic Vallier, John C Marioni, Mariya Chhatriwala, Oliver Stegle
Mar 13, 2020
Recent developments in stem cell biology have enabled the study of cell fate decisions in early human development that are impossible to study in vivo. However, understanding how development varies across individuals and, in...
Published by: Nature Communications
The Ursinus Weekly, October 28, 1976
Ursinus News in Brief: Fourteen chosen for Who's who; P.M. Rabin "dismayed"; Garnet squad spoils Homecoming McCarthy rep visits Ursinus State candidates view higher education An evening of one acts Comment: Exercise your...
Ursinus College Collegeville Pennsylvania newspaper Who's who Yitzhak Rabin Football Eugene McCarthy Frank Brown G. Sieber Pancoast Jay R. Stover ProTheatre election cultural history Higher Education Liberal Studies Social History United States History
Published by: Ursinus College
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression.
Anna SE Cuomo, Daniel D Seaton, Davis J McCarthy, Iker Martinez, Marc Jan Bonder, Jose Garcia-Bernardo, Shradha Amatya, Pedro Madrigal, Abigail Isaacson, Florian Buettner, Andrew Knights, Kedar Nath Natarajan, HipSci Consortium, Ludovic Vallier, John C Marioni, Mariya Chhatriwala, Oliver Stegle
Feb 13, 2020
Recent developments in stem cell biology have enabled the study of cell fate decisions in early human development that are impossible to study in vivo. However, understanding how development varies across individuals and, in...
The Ursinus Weekly, October 14, 1940
Nicholas Barry, Helene Berger, Betty Knoll, James Raban, Joyce Lownes, Betty Dakay, Eva Smith, Dillwyn Darlington, Garnet Adams, Harvey L. Carter, Russell Johnson, Douglas Davis, Ethel Heinaman
Jan 01, 0001
Fighting bears eleven smothered by strong Bucknell squad, 33-7 Louisiana senator to address Democratic rally next week; Republican senator Davis to follow, October 29 Singers will appear in recital at Ursinus Bowen will...
Ursinus College Collegeville Pennsylvania newspaper Norman E. McClure Clara B. Myers YMCA YWCA Highland Hall International Relations Club Music Club LIBRARY Hanny Allina Football field hockey Eleanor Snell Soccer tennis Willard Snyder Harry Showalter cultural history Higher Education Liberal Studies Social History United States History
Published by: Ursinus College
2019 Whitton Executive Series Features Cyber Security Expert
Winthrop University
Jan 01, 0001
HIGHLIGHTS The Whitton Executive Series is sponsored by Elaine Whitton Davis and the College of Business Administration. Elie Bursztein heads anti-abuse research at Google and was a post-doctoral fellow in computer science at...
Published by: Winthrop University
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